Single Cell Expression Atlas

Category

Bioinformatics

Provider

ebi.ac.uk

Type

dataset

Level

unknown

Topic

Bioinformatics

Track

n/a

Section

Open Data Directory

Format

n/a

Status

publishable

Commercial

unknown

Featured

no

Fast start

no

Sequence

n/a

Priority

n/a

Primary source

website_existing

Sources

website_existing

ID

21e41a776208f241

Human Cell Atlas

data.humancellatlas.org

single_cell_biology / retrieval

TCGA/GDC

gdc.cancer.gov

Access: mixed. Cancer genomics

NCBI SRA

ncbi.nlm.nih.gov

Access: open (some controlled). Sequencing reads archive

NCBI RefSeq

ncbi.nlm.nih.gov

curated_reference_sequences

NCBI GenBank

ncbi.nlm.nih.gov

molecular_biology_rag / sequence_lookup

GEO

ncbi.nlm.nih.gov

Access: open. Gene expression omnibus

Ensembl

ensembl.org

Access: open. Genome browser and annotations

ENCODE Project

encodeproject.org

functional_genomics / retrieval

1000 Genomes Project

internationalgenome.org

Access: open. Human variation reference

RIPE Atlas

ripe.net

Access: open. Global internet measurements

Cell Painting Gallery

cellpainting-gallery.org

Access: open. Cell painting image collections

JUMP Cell Painting Dataset

github.com

Access: open. Cell painting imaging datasets